PluginsΒΆ
The following pages describe what QIIME 2 plugins are available and how to develop a new plugin.
- Available plugins
- alignment: Plugin for generating and manipulating alignments.
- composition: Plugin for compositional data analysis.
- cutadapt: Plugin for removing adapter sequences, primers, and other unwanted sequence from sequence data.
- dada2: Plugin for sequence quality control with DADA2.
- deblur: Plugin for sequence quality control with Deblur.
- demux: Plugin for demultiplexing & viewing sequence quality.
- diversity: Plugin for exploring community diversity.
- diversity-lib: Plugin for computing community diversity.
- emperor: Plugin for ordination plotting with Emperor.
- feature-classifier: Plugin for taxonomic classification.
- feature-table: Plugin for working with sample by feature tables.
- fragment-insertion: Plugin for extending phylogenies.
- longitudinal: Plugin for paired sample and time series analyses.
- metadata: Plugin for working with Metadata.
- phylogeny: Plugin for generating and manipulating phylogenies.
- quality-control: Plugin for quality control of feature and sequence data.
- quality-filter: Plugin for PHRED-based filtering and trimming.
- rescript: Pipeline for reference sequence annotation and curation.
- sample-classifier: Plugin for machine learning prediction of sample metadata.
- taxa: Plugin for working with feature taxonomy annotations.
- types: Plugin defining types for microbiome analysis.
- vsearch: Plugin for clustering and dereplicating with vsearch.
- Future plugins
- Developing a QIIME 2 plugin