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feature-table¶
| Description |
This is a QIIME 2 plugin supporting operations on sample by feature tables, such as filtering, merging, and transforming tables. |
|---|---|
| Version | 2024.10.0 |
| Website | https://github.com/qiime2/q2-feature-table |
| Support |
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org |
| q2cli Invocation | qiime feature-table
|
| Artifact API Import | from qiime2.plugins import feature_table
|
Pipelines¶
Methods¶
- filter-features: Filter features from table
- filter-features-conditionally: Filter features from a table based on abundance and prevalence
- filter-samples: Filter samples from table
- filter-seqs: Filter features from sequences
- group: Group samples or features by a metadata column
- merge: Combine multiple tables
- merge-seqs: Combine collections of feature sequences
- merge-taxa: Combine collections of feature taxonomies
- presence-absence: Convert to presence/absence
- rarefy: Rarefy table
- relative-frequency: Convert to relative frequencies
- rename-ids: Renames sample or feature ids in a table
- split: Split one feature table into many
- subsample-ids: Subsample table
- tabulate-feature-frequencies: Tabulate feature frequencies
- tabulate-sample-frequencies: Tabulate sample frequencies
- transpose: Transpose a feature table.