Docstring:
Usage: qiime vsearch fastq-stats [OPTIONS]
A fastq overview via vsearch's fastq_stats, fastq_eestats and fastq_eestats2
utilities. Please see https://github.com/torognes/vsearch for detailed
documentation of these tools.
Inputs:
--i-sequences ARTIFACT SampleData[SequencesWithQuality |
PairedEndSequencesWithQuality]
Fastq sequences [required]
Parameters:
--p-threads NTHREADS The number of threads used for computation.
[default: 1]
Outputs:
--o-visualization VISUALIZATION
[required]
Miscellaneous:
--output-dir PATH Output unspecified results to a directory
--verbose / --quiet Display verbose output to stdout and/or stderr
during execution of this action. Or silence output
if execution is successful (silence is golden).
--example-data PATH Write example data and exit.
--citations Show citations and exit.
--help Show this message and exit.
Import:
from qiime2.plugins.vsearch.visualizers import fastq_stats
Docstring:
Fastq stats with vsearch.
A fastq overview via vsearch's fastq_stats, fastq_eestats and
fastq_eestats2 utilities. Please see https://github.com/torognes/vsearch
for detailed documentation of these tools.
Parameters
----------
sequences : SampleData[SequencesWithQuality | PairedEndSequencesWithQuality]
Fastq sequences
threads : Threads, optional
The number of threads used for computation.
Returns
-------
visualization : Visualization
