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fragment-insertion

Description No description available. See plugin website: https://github.com/qiime2/q2-fragment-insertion
Version 2024.5.0
Website https://github.com/qiime2/q2-fragment-insertion
Support https://github.com/qiime2/q2-fragment-insertion/issues
q2cli Invocation 
qiime fragment-insertion
Artifact API Import 
from qiime2.plugins import fragment_insertion

Citations

  • Sean R. Eddy. Accelerated profile hmm searches. PLOS Computational Biology, 7(10):1–16, 10 2011. URL: https://doi.org/10.1371/journal.pcbi.1002195, doi:10.1371/journal.pcbi.1002195.

  • Stefan Janssen, Daniel McDonald, Antonio Gonzalez, Jose A. Navas-Molina, Lingjing Jiang, Zhenjiang Zech Xu, Kevin Winker, Deborah M. Kado, Eric Orwoll, Mark Manary, Siavash Mirarab, and Rob Knight. Phylogenetic placement of exact amplicon sequences improves associations with clinical information. mSystems, 2018. doi:10.1128/mSystems.00021-18.

  • Frederick A Matsen, Robin B Kodner, and E Virginia Armbrust. Pplacer: linear time maximum-likelihood and bayesian phylogenetic placement of sequences onto a fixed reference tree. BMC bioinformatics, 11(1):538, 2010.

  • Frederick A. Matsen, Noah G. Hoffman, Aaron Gallagher, and Alexandros Stamatakis. A format for phylogenetic placements. PLOS ONE, 7(2):1–4, 02 2012. URL: https://doi.org/10.1371/journal.pone.0031009, doi:10.1371/journal.pone.0031009.

Methods