Fork me on GitHub

tabulate-sample-frequencies: Tabulate sample frequenciesΒΆ

Docstring:

Usage: qiime feature-table tabulate-sample-frequencies [OPTIONS]

  Tabulate feature count and total frequency per sample.

Inputs:
  --i-table ARTIFACT FeatureTable[Frequency | PresenceAbsence |
    RelativeFrequency] The input feature table.                     [required]
Outputs:
  --o-sample-frequencies ARTIFACT
    ImmutableMetadata  Observed feature count and total frequencies per
                       sample.                                      [required]
Miscellaneous:
  --output-dir PATH    Output unspecified results to a directory
  --verbose / --quiet  Display verbose output to stdout and/or stderr during
                       execution of this action. Or silence output if
                       execution is successful (silence is golden).
  --example-data PATH  Write example data and exit.
  --citations          Show citations and exit.
  --help               Show this message and exit.

Examples:
  # ### example: feature table tabulate sample frequencies
  qiime feature-table tabulate-sample-frequencies \
    --i-table feature-table.qza \
    --o-sample-frequencies sample-frequencies.qza

Import:

from qiime2.plugins.feature_table.methods import tabulate_sample_frequencies

Docstring:

Tabulate sample frequencies

Tabulate feature count and total frequency per sample.

Parameters
----------
table : FeatureTable[Frequency | PresenceAbsence | RelativeFrequency]
    The input feature table.

Returns
-------
sample_frequencies : ImmutableMetadata
    Observed feature count and total frequencies per sample.