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feature-classifier

Description This QIIME 2 plugin supports taxonomic classification of features using a variety of methods, including Naive Bayes, vsearch, and BLAST+.
Version 2024.5.0
Website https://github.com/qiime2/q2-feature-classifier
Support Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
q2cli Invocation 
qiime feature-classifier
Artifact API Import 
from qiime2.plugins import feature_classifier

Citations

  • Nicholas A. Bokulich, Benjamin D. Kaehler, Jai Ram Rideout, Matthew Dillon, Evan Bolyen, Rob Knight, Gavin A. Huttley, and J. Gregory Caporaso. Optimizing taxonomic classification of marker-gene amplicon sequences with qiime 2's q2-feature-classifier plugin. Microbiome, 6(1):90, 2018. URL: https://doi.org/10.1186/s40168-018-0470-z, doi:10.1186/s40168-018-0470-z.

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Methods