summarize: Summarize counts per sample.¶

Docstring:

Usage: qiime demux summarize [OPTIONS]

  Summarize counts per sample for all samples, and generate interactive
  positional quality plots based on `n` randomly selected sequences.

Inputs:
  --i-data ARTIFACT SampleData[SequencesWithQuality |
    PairedEndSequencesWithQuality | JoinedSequencesWithQuality]
                       The demultiplexed sequences to be summarized.
                                                                    [required]
Parameters:
  --p-n INTEGER        The number of sequences that should be selected at
                       random for quality score plots. The quality plots will
                       present the average positional qualities across all of
                       the sequences selected. If input sequences are paired
                       end, plots will be generated for both forward and
                       reverse reads for the same `n` sequences.
                                                              [default: 10000]
Outputs:
  --o-visualization VISUALIZATION
                                                                    [required]
Miscellaneous:
  --output-dir PATH    Output unspecified results to a directory
  --verbose / --quiet  Display verbose output to stdout and/or stderr during
                       execution of this action. Or silence output if
                       execution is successful (silence is golden).
  --example-data PATH  Write example data and exit.
  --citations          Show citations and exit.
  --help               Show this message and exit.

Examples:
  # ### example: demux
  qiime demux summarize \
    --i-data demux.qza \
    --o-visualization visualization.qzv