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dada2

Description This QIIME 2 plugin wraps DADA2 and supports sequence quality control for single-end and paired-end reads using the DADA2 R library.
Version 2024.5.0
Website http://benjjneb.github.io/dada2/
Support Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
q2cli Invocation 
qiime dada2
Artifact API Import 
from qiime2.plugins import dada2

Citations

  • Benjamin J Callahan, Paul J McMurdie, Michael J Rosen, Andrew W Han, Amy Jo A Johnson, and Susan P Holmes. Dada2: high-resolution sample inference from illumina amplicon data. Nature methods, 13(7):581, 2016. doi:10.1038/nmeth.3869.

Methods