cutadapt¶
| Description |
This QIIME 2 plugin uses cutadapt to work with adapters (e.g. barcodes, primers) in sequence data. |
|---|---|
| Version | 2024.5.0 |
| Website | https://github.com/qiime2/q2-cutadapt |
| Support |
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org |
| q2cli Invocation | qiime cutadapt
|
| Artifact API Import | from qiime2.plugins import cutadapt
|
| Citations |
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Methods¶
- demux-paired: Demultiplex paired-end sequence data with barcodes in-sequence.
- demux-single: Demultiplex single-end sequence data with barcodes in-sequence.
- trim-paired: Find and remove adapters in demultiplexed paired-end sequences.
- trim-single: Find and remove adapters in demultiplexed single-end sequences.