fastq-stats: Fastq stats with vsearch.¶

Docstring:

Usage: qiime vsearch fastq-stats [OPTIONS]

  A fastq overview via vsearch's fastq_stats, fastq_eestats and fastq_eestats2
  utilities. Please see https://github.com/torognes/vsearch for detailed
  documentation of these tools.

Inputs:
  --i-sequences ARTIFACT SampleData[SequencesWithQuality |
    PairedEndSequencesWithQuality]
                          Fastq sequences                           [required]
Parameters:
  --p-threads NTHREADS    The number of threads used for computation.
                                                                  [default: 1]
Outputs:
  --o-visualization VISUALIZATION
                                                                    [required]
Miscellaneous:
  --output-dir PATH       Output unspecified results to a directory
  --verbose / --quiet     Display verbose output to stdout and/or stderr
                          during execution of this action. Or silence output
                          if execution is successful (silence is golden).
  --example-data PATH     Write example data and exit.
  --citations             Show citations and exit.
  --use-cache DIRECTORY   Specify the cache to be used for the intermediate
                          work of this action. If not provided, the default
                          cache under $TMP/qiime2/ will be used.
                          IMPORTANT FOR HPC USERS: If you are on an HPC system
                          and are using parallel execution it is important to
                          set this to a location that is globally accessible
                          to all nodes in the cluster.
  --help                  Show this message and exit.