boxplot: Boxplot¶

Docstring:

Usage: qiime vizard boxplot [OPTIONS]

  Basic boxplot for visualizing a numeric Metadata measure grouped by a
  categorical Metadata measure with choices for the whisker range.

Parameters:
  --m-metadata-file METADATA...
    (multiple arguments   Any metadata-like input with at least one numeric
     will be merged)      measure and one categorical measure for visualizing.
                                                                    [required]
  --p-distribution-measure TEXT
                          The numeric measure that will be used to create
                          each box plot distribution.               [required]
  --p-group-by TEXT       The categorical measure that will be used to group
                          the data into separate box plots. If left blank, all
                          data will be represented within a single box.
                                                                    [optional]
  --p-whisker-range TEXT Choices('tukeys_iqr', 'percentile', 'minmax')
                          The range that will be used for calculating the
                          whisker lengths for each box. Options are
                          `tukeys_iqr` (1.5 IQR clamped to the data extent),
                          `percentile` (91th/9th percentile), or `minmax`. Any
                          data points that fall outside of the chosen range
                          will be represented as outliers that are plotted as
                          circular points, unless the `suppressOutliers`
                          checkbox has been enabled on the rendered
                          visualization.               [default: 'percentile']
  --p-box-orientation TEXT Choices('horizontal', 'vertical')
                          The visual orientataion of the boxes (either
                          horizontal or vertical).     [default: 'horizontal']
  --p-title TEXT          The title of the boxplot.                 [optional]
Outputs:
  --o-visualization VISUALIZATION
                                                                    [required]
Miscellaneous:
  --output-dir PATH       Output unspecified results to a directory
  --verbose / --quiet     Display verbose output to stdout and/or stderr
                          during execution of this action. Or silence output
                          if execution is successful (silence is golden).
  --example-data PATH     Write example data and exit.
  --citations             Show citations and exit.
  --use-cache DIRECTORY   Specify the cache to be used for the intermediate
                          work of this action. If not provided, the default
                          cache under $TMP/qiime2/ will be used.
                          IMPORTANT FOR HPC USERS: If you are on an HPC system
                          and are using parallel execution it is important to
                          set this to a location that is globally accessible
                          to all nodes in the cluster.
  --help                  Show this message and exit.