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partition-sample-data-mags: Partition MAGsΒΆ

Docstring:

Usage: qiime types partition-sample-data-mags [OPTIONS]

  Partition a SampleData[MAGs] artifact into smaller artifacts containing
  subsets of the MAGs

Inputs:
  --i-mags ARTIFACT      The MAGs to partition.
    SampleData[MAGs]                                                [required]
Parameters:
  --p-num-partitions INTEGER
    Range(1, None)       The number of partitions to split the MAGs into.
                         Defaults to partitioning into individual MAGs.
                                                                    [optional]
Outputs:
  --o-partitioned-mags ARTIFACTS... Collection[SampleData[MAGs]]
                                                                    [required]
Miscellaneous:
  --output-dir PATH      Output unspecified results to a directory
  --verbose / --quiet    Display verbose output to stdout and/or stderr
                         during execution of this action. Or silence output if
                         execution is successful (silence is golden).
  --example-data PATH    Write example data and exit.
  --citations            Show citations and exit.
  --use-cache DIRECTORY  Specify the cache to be used for the intermediate
                         work of this action. If not provided, the default
                         cache under $TMP/qiime2/ will be used.
                         IMPORTANT FOR HPC USERS: If you are on an HPC system
                         and are using parallel execution it is important to
                         set this to a location that is globally accessible to
                         all nodes in the cluster.
  --help                 Show this message and exit.

Import:

from qiime2.plugins.types.methods import partition_sample_data_mags

Docstring:

Partition MAGs

Partition a SampleData[MAGs] artifact into smaller artifacts containing
subsets of the MAGs

Parameters
----------
mags : SampleData[MAGs]
    The MAGs to partition.
num_partitions : Int % Range(1, None), optional
    The number of partitions to split the MAGs into. Defaults to
    partitioning into individual MAGs.

Returns
-------
partitioned_mags : Collection[SampleData[MAGs]]