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partition-orthologs: Partition orthologsΒΆ

Docstring:

Usage: qiime types partition-orthologs [OPTIONS]

  Partition a SampleData[BLAST6] artifact into smaller artifacts containing
  subsets of the BLAST6 reports.

Inputs:
  --i-orthologs ARTIFACT SampleData[Orthologs]
                          The orthologs to partition.               [required]
Parameters:
  --p-num-partitions INTEGER
    Range(1, None)        The number of partitions to split the MAGs into.
                          Defaults to partitioning into individual MAGs.
                                                                    [optional]
Outputs:
  --o-partitioned-orthologs ARTIFACTS... Collection[SampleData[Orthologs]]
                                                                    [required]
Miscellaneous:
  --output-dir PATH       Output unspecified results to a directory
  --verbose / --quiet     Display verbose output to stdout and/or stderr
                          during execution of this action. Or silence output
                          if execution is successful (silence is golden).
  --example-data PATH     Write example data and exit.
  --citations             Show citations and exit.
  --use-cache DIRECTORY   Specify the cache to be used for the intermediate
                          work of this action. If not provided, the default
                          cache under $TMP/qiime2/ will be used.
                          IMPORTANT FOR HPC USERS: If you are on an HPC system
                          and are using parallel execution it is important to
                          set this to a location that is globally accessible
                          to all nodes in the cluster.
  --help                  Show this message and exit.

Import:

from qiime2.plugins.types.methods import partition_orthologs

Docstring:

Partition orthologs

Partition a SampleData[BLAST6] artifact into smaller artifacts containing
subsets of the BLAST6 reports.

Parameters
----------
orthologs : SampleData[Orthologs]
    The orthologs to partition.
num_partitions : Int % Range(1, None), optional
    The number of partitions to split the MAGs into. Defaults to
    partitioning into individual MAGs.

Returns
-------
partitioned_orthologs : Collection[SampleData[Orthologs]]