Docstring:
Usage: qiime stats wilcoxon-srt-facet [OPTIONS]
Inputs:
--i-distribution ARTIFACT Dist1D[Multi | NestedOrdered | NestedUnordered,
Matched] [required]
Parameters:
--p-ignore-empty-comparator / --p-no-ignore-empty-comparator
Ignore any group that does not have any overlapping
subjects with comparison group. These groups will
have NaNs in the stats table output [default: True]
Outputs:
--o-stats ARTIFACT
StatsTable[Pairwise] [required]
Miscellaneous:
--output-dir PATH Output unspecified results to a directory
--verbose / --quiet Display verbose output to stdout and/or stderr
during execution of this action. Or silence output
if execution is successful (silence is golden).
--recycle-pool TEXT Use a cache pool for pipeline resumption. QIIME 2
will cache your results in this pool for reuse by
future invocations. These pool are retained until
deleted by the user. If not provided, QIIME 2 will
create a pool which is automatically reused by
invocations of the same action and removed if the
action is successful. Note: these pools are local to
the cache you are using.
--no-recycle Do not recycle results from a previous failed
pipeline run or save the results from this run for
future recycling.
--parallel Execute your action in parallel. This flag will use
your default parallel config.
--parallel-config FILE Execute your action in parallel using a config at
the indicated path.
--example-data PATH Write example data and exit.
--citations Show citations and exit.
--use-cache DIRECTORY Specify the cache to be used for the intermediate
work of this action. If not provided, the default
cache under $TMP/qiime2/ will be used.
IMPORTANT FOR HPC USERS: If you are on an HPC system
and are using parallel execution it is important to
set this to a location that is globally accessible
to all nodes in the cluster.
--help Show this message and exit.
Examples:
# ### example: wilcoxon srt facet
qiime stats wilcoxon-srt-facet \
--i-distribution dist.qza \
--o-stats stats.qza
Import:
from qiime2.plugins.stats.pipelines import wilcoxon_srt_facet
Docstring:
Per-facet Wilcoxon Signed Rank Test
Parameters
----------
distribution : Dist1D[Multi | NestedOrdered | NestedUnordered, Matched]
ignore_empty_comparator : Bool, optional
Ignore any group that does not have any overlapping subjects with
comparison group. These groups will have NaNs in the stats table output
Returns
-------
stats : StatsTable[Pairwise]
