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mann-whitney-u-facet: Per-facet Mann-Whitney U Test¶
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Docstring:
Usage: qiime stats mann-whitney-u-facet [OPTIONS] Inputs: --i-distribution ARTIFACT Dist1D[Multi, Independent]¹ | Dist1D[NestedOrdered | NestedUnordered, Matched]² | Dist1D[NestedOrdered | NestedUnordered, Independent]³ [required] Parameters: --p-facet VALUE Str % Choices('within')¹'² | Str % Choices('within', 'across')³ Whether to facet within or across the outer group. [default: 'within'] Outputs: --o-stats ARTIFACT StatsTable[Pairwise] [required] Miscellaneous: --output-dir PATH Output unspecified results to a directory --verbose / --quiet Display verbose output to stdout and/or stderr during execution of this action. Or silence output if execution is successful (silence is golden). --recycle-pool TEXT Use a cache pool for pipeline resumption. QIIME 2 will cache your results in this pool for reuse by future invocations. These pool are retained until deleted by the user. If not provided, QIIME 2 will create a pool which is automatically reused by invocations of the same action and removed if the action is successful. Note: these pools are local to the cache you are using. --no-recycle Do not recycle results from a previous failed pipeline run or save the results from this run for future recycling. --parallel Execute your action in parallel. This flag will use your default parallel config. --parallel-config FILE Execute your action in parallel using a config at the indicated path. --example-data PATH Write example data and exit. --citations Show citations and exit. --use-cache DIRECTORY Specify the cache to be used for the intermediate work of this action. If not provided, the default cache under $TMP/qiime2/will be used. IMPORTANT FOR HPC USERS: If you are on an HPC system and are using parallel execution it is important to set this to a location that is globally accessible to all nodes in the cluster. --help Show this message and exit. Examples: # ### example: mann whitney u facet across qiime stats mann-whitney-u-facet \ --i-distribution dist.qza \ --p-facet across \ --o-stats stats.qza # ### example: mann whitney u facet within qiime stats mann-whitney-u-facet \ --i-distribution dist.qza \ --p-facet within \ --o-stats stats.qza
Import:
from qiime2.plugins.stats.pipelines import mann_whitney_u_facet
Docstring:
Per-facet Mann-Whitney U Test Parameters ---------- distribution : Dist1D[Multi, Independent]¹ | Dist1D[NestedOrdered | NestedUnordered, Matched]² | Dist1D[NestedOrdered | NestedUnordered, Independent]³ facet : Str % Choices('within')¹'² | Str % Choices('within', 'across')³, optional Whether to facet within or across the outer group. Returns ------- stats : StatsTable[Pairwise]