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reverse-transcribe: Reverse transcribe RNA to DNA sequences.¶
Docstring:
Usage: qiime rescript reverse-transcribe [OPTIONS] Reverse transcribe RNA to DNA sequences. Accepts aligned or unaligned RNA sequences as input. Inputs: --i-rna-sequences ARTIFACT FeatureData[AlignedRNASequence¹ | RNASequence²] RNA Sequences to reverse transcribe to DNA. [required] Outputs: --o-dna-sequences ARTIFACT FeatureData[AlignedSequence¹ | Sequence²] Reverse-transcribed DNA sequences. [required] Miscellaneous: --output-dir PATH Output unspecified results to a directory --verbose / --quiet Display verbose output to stdout and/or stderr during execution of this action. Or silence output if execution is successful (silence is golden). --example-data PATH Write example data and exit. --citations Show citations and exit. --use-cache DIRECTORY Specify the cache to be used for the intermediate work of this action. If not provided, the default cache under $TMP/qiime2/will be used. IMPORTANT FOR HPC USERS: If you are on an HPC system and are using parallel execution it is important to set this to a location that is globally accessible to all nodes in the cluster. --help Show this message and exit.
Import:
from qiime2.plugins.rescript.methods import reverse_transcribe
Docstring:
Reverse transcribe RNA to DNA sequences. Reverse transcribe RNA to DNA sequences. Accepts aligned or unaligned RNA sequences as input. Parameters ---------- rna_sequences : FeatureData[AlignedRNASequence¹ | RNASequence²] RNA Sequences to reverse transcribe to DNA. Returns ------- dna_sequences : FeatureData[AlignedSequence¹ | Sequence²] Reverse-transcribed DNA sequences.