evaluate-seqs: Compute summary statistics on sequence artifact(s).¶

Docstring:

Usage: qiime rescript evaluate-seqs [OPTIONS]

  Compute summary statistics on sequence artifact(s) and visualize. Summary
  statistics include the number of unique sequences, sequence entropy, kmer
  entropy, and sequence length distributions. This action is useful for both
  reference taxonomies and classification results.

Inputs:
  --i-sequences ARTIFACTS... List[FeatureData[Sequence]]
                         One or more sets of sequences to evaluate. [required]
Parameters:
  --p-labels TEXT...     List of labels to use for labeling evaluation
    List[Str]            results in the resulting visualization. Inputs are
                         labeled with labels in the order that each is input.
                         If there are fewer labels than inputs (or no labels),
                         unnamed inputs are labeled numerically in sequential
                         order. Extra labels are ignored.           [optional]
  --p-kmer-lengths INTEGERS...
    Range(1, None)       Sequence kmer lengths to optionally use for entropy
                         calculation. Warning: kmer entropy calculations may
                         be time-consuming for large sequence sets. [optional]
  --p-subsample-kmers PROPORTION Range(0, 1, inclusive_start=False,
    inclusive_end=True)  Optionally subsample sequences prior to kmer entropy
                         measurement. A fraction of the input sequences will
                         be randomly subsampled at the specified value.
                                                                [default: 1.0]
  --p-palette TEXT Choices('Set1', 'Set2', 'Set3', 'Pastel1', 'Pastel2',
    'Paired', 'Accent', 'Dark2', 'tab10', 'tab20', 'tab20b', 'tab20c',
    'viridis', 'plasma', 'inferno', 'magma', 'cividis', 'terrain', 'rainbow',
    'PiYG', 'PRGn', 'BrBG', 'PuOr', 'RdGy', 'RdBu', 'RdYlBu', 'RdYlGn',
    'Spectral', 'coolwarm', 'bwr', 'seismic')
                         Color palette to use for plotting evaluation
                         results.                         [default: 'viridis']
Outputs:
  --o-visualization VISUALIZATION
                                                                    [required]
Miscellaneous:
  --output-dir PATH      Output unspecified results to a directory
  --verbose / --quiet    Display verbose output to stdout and/or stderr
                         during execution of this action. Or silence output if
                         execution is successful (silence is golden).
  --example-data PATH    Write example data and exit.
  --citations            Show citations and exit.
  --use-cache DIRECTORY  Specify the cache to be used for the intermediate
                         work of this action. If not provided, the default
                         cache under $TMP/qiime2/ will be used.
                         IMPORTANT FOR HPC USERS: If you are on an HPC system
                         and are using parallel execution it is important to
                         set this to a location that is globally accessible to
                         all nodes in the cluster.
  --help                 Show this message and exit.