degap-seqs: Remove gaps from DNA sequence alignments.¶

Docstring:

Usage: qiime rescript degap-seqs [OPTIONS]

  This method converts aligned DNA sequences to unaligned DNA sequences by
  removing gaps ("-") and missing data (".") characters from the sequences.
  Essentially, 'unaligning' the sequences.

Inputs:
  --i-aligned-sequences ARTIFACT FeatureData[AlignedSequence]
                          Aligned DNA Sequences to be degapped.     [required]
Parameters:
  --p-min-length INTEGER  Minimum length of sequence to be returned after
    Range(1, None)        degapping.                              [default: 1]
Outputs:
  --o-degapped-sequences ARTIFACT FeatureData[Sequence]
                          The resulting unaligned (degapped) DNA sequences.
                                                                    [required]
Miscellaneous:
  --output-dir PATH       Output unspecified results to a directory
  --verbose / --quiet     Display verbose output to stdout and/or stderr
                          during execution of this action. Or silence output
                          if execution is successful (silence is golden).
  --example-data PATH     Write example data and exit.
  --citations             Show citations and exit.
  --use-cache DIRECTORY   Specify the cache to be used for the intermediate
                          work of this action. If not provided, the default
                          cache under $TMP/qiime2/ will be used.
                          IMPORTANT FOR HPC USERS: If you are on an HPC system
                          and are using parallel execution it is important to
                          set this to a location that is globally accessible
                          to all nodes in the cluster.
  --help                  Show this message and exit.