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quality-filter

Description This QIIME 2 plugin supports filtering and trimming of sequence reads based on PHRED scores and ambiguous nucleotide characters.
Version 2024.10.0
Website https://github.com/qiime2/q2-quality-filter
Support Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
q2cli Invocation 
qiime quality-filter
Artifact API Import 
from qiime2.plugins import quality_filter

Citations

  • Nicholas A Bokulich, Sathish Subramanian, Jeremiah J Faith, Dirk Gevers, Jeffrey I Gordon, Rob Knight, David A Mills, and J Gregory Caporaso. Quality-filtering vastly improves diversity estimates from illumina amplicon sequencing. Nature methods, 10(1):57, 2013. doi:10.1038/nmeth.2276.

Methods