bowtie2-build: Build bowtie2 index from reference sequences.¶

Docstring:

Usage: qiime quality-control bowtie2-build [OPTIONS]

  Build bowtie2 index from reference sequences.

Inputs:
  --i-sequences ARTIFACT FeatureData[Sequence]
                          Reference sequences used to build bowtie2 index.
                                                                    [required]
Parameters:
  --p-n-threads NTHREADS  Number of threads to launch.            [default: 1]
Outputs:
  --o-database ARTIFACT   Bowtie2 index.
    Bowtie2Index                                                    [required]
Miscellaneous:
  --output-dir PATH       Output unspecified results to a directory
  --verbose / --quiet     Display verbose output to stdout and/or stderr
                          during execution of this action. Or silence output
                          if execution is successful (silence is golden).
  --example-data PATH     Write example data and exit.
  --citations             Show citations and exit.
  --use-cache DIRECTORY   Specify the cache to be used for the intermediate
                          work of this action. If not provided, the default
                          cache under $TMP/qiime2/ will be used.
                          IMPORTANT FOR HPC USERS: If you are on an HPC system
                          and are using parallel execution it is important to
                          set this to a location that is globally accessible
                          to all nodes in the cluster.
  --help                  Show this message and exit.