Docstring:
Usage: qiime feature-table transpose [OPTIONS]
Transpose the rows and columns (typically samples and features) of a feature
table.
Inputs:
--i-table ARTIFACT FeatureTable[Frequency¹ | RelativeFrequency² |
PresenceAbsence³ | Composition⁴]
The feature table to be transposed. [required]
Outputs:
--o-transposed-feature-table ARTIFACT FeatureTable[Frequency¹ |
RelativeFrequency² | PresenceAbsence³ | Composition⁴]
The resulting transposed feature table. [required]
Miscellaneous:
--output-dir PATH Output unspecified results to a directory
--verbose / --quiet Display verbose output to stdout and/or stderr
during execution of this action. Or silence output if
execution is successful (silence is golden).
--example-data PATH Write example data and exit.
--citations Show citations and exit.
--use-cache DIRECTORY Specify the cache to be used for the intermediate
work of this action. If not provided, the default
cache under $TMP/qiime2/ will be used.
IMPORTANT FOR HPC USERS: If you are on an HPC system
and are using parallel execution it is important to
set this to a location that is globally accessible to
all nodes in the cluster.
--help Show this message and exit.
Import:
from qiime2.plugins.feature_table.methods import transpose
Docstring:
Transpose a feature table.
Transpose the rows and columns (typically samples and features) of a
feature table.
Parameters
----------
table : FeatureTable[Frequency¹ | RelativeFrequency² | PresenceAbsence³ | Composition⁴]
The feature table to be transposed.
Returns
-------
transposed_feature_table : FeatureTable[Frequency¹ | RelativeFrequency² | PresenceAbsence³ | Composition⁴]
The resulting transposed feature table.
