Docstring:
Usage: qiime feature-table tabulate-sample-frequencies [OPTIONS]
Tabulate feature count and total frequency per sample.
Inputs:
--i-table ARTIFACT FeatureTable[Frequency | PresenceAbsence |
RelativeFrequency] The input feature table. [required]
Outputs:
--o-sample-frequencies ARTIFACT
ImmutableMetadata Observed feature count and total frequencies per
sample. [required]
Miscellaneous:
--output-dir PATH Output unspecified results to a directory
--verbose / --quiet Display verbose output to stdout and/or stderr
during execution of this action. Or silence output if
execution is successful (silence is golden).
--example-data PATH Write example data and exit.
--citations Show citations and exit.
--use-cache DIRECTORY Specify the cache to be used for the intermediate
work of this action. If not provided, the default
cache under $TMP/qiime2/ will be used.
IMPORTANT FOR HPC USERS: If you are on an HPC system
and are using parallel execution it is important to
set this to a location that is globally accessible to
all nodes in the cluster.
--help Show this message and exit.
Examples:
# ### example: feature table tabulate sample frequencies
qiime feature-table tabulate-sample-frequencies \
--i-table feature-table.qza \
--o-sample-frequencies sample-frequencies.qza
Import:
from qiime2.plugins.feature_table.methods import tabulate_sample_frequencies
Docstring:
Tabulate sample frequencies
Tabulate feature count and total frequency per sample.
Parameters
----------
table : FeatureTable[Frequency | PresenceAbsence | RelativeFrequency]
The input feature table.
Returns
-------
sample_frequencies : ImmutableMetadata
Observed feature count and total frequencies per sample.
