Docstring:
Usage: qiime feature-table tabulate-feature-frequencies [OPTIONS]
Tabulate sample count and total frequency per feature.
Inputs:
--i-table ARTIFACT FeatureTable[Frequency | PresenceAbsence |
RelativeFrequency] The input feature table. [required]
Outputs:
--o-feature-frequencies ARTIFACT
ImmutableMetadata Per-sample and total frequencies per feature.
[required]
Miscellaneous:
--output-dir PATH Output unspecified results to a directory
--verbose / --quiet Display verbose output to stdout and/or stderr
during execution of this action. Or silence output if
execution is successful (silence is golden).
--example-data PATH Write example data and exit.
--citations Show citations and exit.
--use-cache DIRECTORY Specify the cache to be used for the intermediate
work of this action. If not provided, the default
cache under $TMP/qiime2/ will be used.
IMPORTANT FOR HPC USERS: If you are on an HPC system
and are using parallel execution it is important to
set this to a location that is globally accessible to
all nodes in the cluster.
--help Show this message and exit.
Examples:
# ### example: feature table tabulate feature frequencies
qiime feature-table tabulate-feature-frequencies \
--i-table feature-table.qza \
--o-feature-frequencies feature-frequencies.qza
Import:
from qiime2.plugins.feature_table.methods import tabulate_feature_frequencies
Docstring:
Tabulate feature frequencies
Tabulate sample count and total frequency per feature.
Parameters
----------
table : FeatureTable[Frequency | PresenceAbsence | RelativeFrequency]
The input feature table.
Returns
-------
feature_frequencies : ImmutableMetadata
Per-sample and total frequencies per feature.
