Docstring:
Usage: qiime feature-table presence-absence [OPTIONS]
Convert frequencies to binary values indicating presence or absence of a
feature in a sample.
Inputs:
--i-table ARTIFACT FeatureTable[Frequency | RelativeFrequency]
The feature table to be converted into
presence/absence abundances. [required]
Outputs:
--o-presence-absence-table ARTIFACT FeatureTable[PresenceAbsence]
The resulting presence/absence feature table.
[required]
Miscellaneous:
--output-dir PATH Output unspecified results to a directory
--verbose / --quiet Display verbose output to stdout and/or stderr
during execution of this action. Or silence output if
execution is successful (silence is golden).
--example-data PATH Write example data and exit.
--citations Show citations and exit.
--use-cache DIRECTORY Specify the cache to be used for the intermediate
work of this action. If not provided, the default
cache under $TMP/qiime2/ will be used.
IMPORTANT FOR HPC USERS: If you are on an HPC system
and are using parallel execution it is important to
set this to a location that is globally accessible to
all nodes in the cluster.
--help Show this message and exit.
Import:
from qiime2.plugins.feature_table.methods import presence_absence
Docstring:
Convert to presence/absence
Convert frequencies to binary values indicating presence or absence of a
feature in a sample.
Parameters
----------
table : FeatureTable[Frequency | RelativeFrequency]
The feature table to be converted into presence/absence abundances.
Returns
-------
presence_absence_table : FeatureTable[PresenceAbsence]
The resulting presence/absence feature table.
