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merge-taxa: Combine collections of feature taxonomies¶
Docstring:
Usage: qiime feature-table merge-taxa [OPTIONS] Combines a pair of feature data objects which may or may not contain data for the same features. If different feature data is present for the same feature id in the inputs, the data from the first will be propagated to the result. Inputs: --i-data ARTIFACTS... List[FeatureData[Taxonomy]] The collection of feature taxonomies to be merged. [required] Outputs: --o-merged-data ARTIFACT FeatureData[Taxonomy] The resulting collection of feature taxonomies containing all feature taxonomies provided. [required] Miscellaneous: --output-dir PATH Output unspecified results to a directory --verbose / --quiet Display verbose output to stdout and/or stderr during execution of this action. Or silence output if execution is successful (silence is golden). --example-data PATH Write example data and exit. --citations Show citations and exit. --use-cache DIRECTORY Specify the cache to be used for the intermediate work of this action. If not provided, the default cache under $TMP/qiime2/will be used. IMPORTANT FOR HPC USERS: If you are on an HPC system and are using parallel execution it is important to set this to a location that is globally accessible to all nodes in the cluster. --help Show this message and exit. Examples: # ### example: feature table merge taxa qiime feature-table merge-taxa \ --i-data tax1.qza tax2.qza \ --o-merged-data merged-data.qza
Import:
from qiime2.plugins.feature_table.methods import merge_taxa
Docstring:
Combine collections of feature taxonomies Combines a pair of feature data objects which may or may not contain data for the same features. If different feature data is present for the same feature id in the inputs, the data from the first will be propagated to the result. Parameters ---------- data : List[FeatureData[Taxonomy]] The collection of feature taxonomies to be merged. Returns ------- merged_data : FeatureData[Taxonomy] The resulting collection of feature taxonomies containing all feature taxonomies provided.