Docstring:
Usage: qiime feature-table merge-taxa [OPTIONS]
Combines a pair of feature data objects which may or may not contain data
for the same features. If different feature data is present for the same
feature id in the inputs, the data from the first will be propagated to the
result.
Inputs:
--i-data ARTIFACTS... List[FeatureData[Taxonomy]]
The collection of feature taxonomies to be merged.
[required]
Outputs:
--o-merged-data ARTIFACT FeatureData[Taxonomy]
The resulting collection of feature taxonomies
containing all feature taxonomies provided.
[required]
Miscellaneous:
--output-dir PATH Output unspecified results to a directory
--verbose / --quiet Display verbose output to stdout and/or stderr
during execution of this action. Or silence output if
execution is successful (silence is golden).
--example-data PATH Write example data and exit.
--citations Show citations and exit.
--use-cache DIRECTORY Specify the cache to be used for the intermediate
work of this action. If not provided, the default
cache under $TMP/qiime2/ will be used.
IMPORTANT FOR HPC USERS: If you are on an HPC system
and are using parallel execution it is important to
set this to a location that is globally accessible to
all nodes in the cluster.
--help Show this message and exit.
Examples:
# ### example: feature table merge taxa
qiime feature-table merge-taxa \
--i-data tax1.qza tax2.qza \
--o-merged-data merged-data.qza
Import:
from qiime2.plugins.feature_table.methods import merge_taxa
Docstring:
Combine collections of feature taxonomies
Combines a pair of feature data objects which may or may not contain data
for the same features. If different feature data is present for the same
feature id in the inputs, the data from the first will be propagated to the
result.
Parameters
----------
data : List[FeatureData[Taxonomy]]
The collection of feature taxonomies to be merged.
Returns
-------
merged_data : FeatureData[Taxonomy]
The resulting collection of feature taxonomies containing all feature
taxonomies provided.
