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makeblastdb: Make BLAST database.

Citations
  • Christiam Camacho, George Coulouris, Vahram Avagyan, Ning Ma, Jason Papadopoulos, Kevin Bealer, and Thomas L Madden. Blast+: architecture and applications. BMC bioinformatics, 10(1):421, 2009. doi:10.1186/1471-2105-10-421.

Docstring:

Usage: qiime feature-classifier makeblastdb [OPTIONS]

  Make BLAST database from custom sequence collection.

Inputs:
  --i-sequences ARTIFACT FeatureData[Sequence]
                          Input reference sequences.                [required]
Outputs:
  --o-database ARTIFACT   Output BLAST database.
    BLASTDB                                                         [required]
Miscellaneous:
  --output-dir PATH       Output unspecified results to a directory
  --verbose / --quiet     Display verbose output to stdout and/or stderr
                          during execution of this action. Or silence output
                          if execution is successful (silence is golden).
  --example-data PATH     Write example data and exit.
  --citations             Show citations and exit.
  --use-cache DIRECTORY   Specify the cache to be used for the intermediate
                          work of this action. If not provided, the default
                          cache under $TMP/qiime2/ will be used.
                          IMPORTANT FOR HPC USERS: If you are on an HPC system
                          and are using parallel execution it is important to
                          set this to a location that is globally accessible
                          to all nodes in the cluster.
  --help                  Show this message and exit.

Import:

from qiime2.plugins.feature_classifier.methods import makeblastdb

Docstring:

Make BLAST database.

Make BLAST database from custom sequence collection.

Parameters
----------
sequences : FeatureData[Sequence]
    Input reference sequences.

Returns
-------
database : BLASTDB
    Output BLAST database.