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feature-classifier¶
| Description |
This QIIME 2 plugin supports taxonomic classification of features using a variety of methods, including Naive Bayes, vsearch, and BLAST+. |
|---|---|
| Version | 2024.10.0 |
| Website | https://github.com/qiime2/q2-feature-classifier |
| Support |
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org |
| q2cli Invocation | qiime feature-classifier
|
| Artifact API Import | from qiime2.plugins import feature_classifier
|
| Citations |
|
Pipelines¶
Methods¶
- blast: BLAST+ local alignment search.
- classify-sklearn: Pre-fitted sklearn-based taxonomy classifier
- extract-reads: Extract reads from reference sequences.
- find-consensus-annotation: Find consensus among multiple annotations.
- fit-classifier-naive-bayes: Train the naive_bayes classifier
- fit-classifier-sklearn: Train an almost arbitrary scikit-learn classifier
- makeblastdb: Make BLAST database.
- vsearch-global: VSEARCH global alignment search