Docstring:
Usage: qiime diversity alpha-group-significance [OPTIONS]
Visually and statistically compare groups of alpha diversity values.
Inputs:
--i-alpha-diversity ARTIFACT SampleData[AlphaDiversity]
Vector of alpha diversity values by sample.
[required]
Parameters:
--m-metadata-file METADATA...
(multiple The sample metadata.
arguments will be
merged) [required]
Outputs:
--o-visualization VISUALIZATION
[required]
Miscellaneous:
--output-dir PATH Output unspecified results to a directory
--verbose / --quiet Display verbose output to stdout and/or stderr
during execution of this action. Or silence output if
execution is successful (silence is golden).
--example-data PATH Write example data and exit.
--citations Show citations and exit.
--use-cache DIRECTORY Specify the cache to be used for the intermediate
work of this action. If not provided, the default
cache under $TMP/qiime2/ will be used.
IMPORTANT FOR HPC USERS: If you are on an HPC system
and are using parallel execution it is important to
set this to a location that is globally accessible to
all nodes in the cluster.
--help Show this message and exit.
Examples:
# ### example: alpha group significance faith pd
qiime diversity alpha-group-significance \
--i-alpha-diversity alpha-div-faith-pd.qza \
--m-metadata-file metadata.tsv \
--o-visualization visualization.qzv
Import:
from qiime2.plugins.diversity.visualizers import alpha_group_significance
Docstring:
Alpha diversity comparisons
Visually and statistically compare groups of alpha diversity values.
Parameters
----------
alpha_diversity : SampleData[AlphaDiversity]
Vector of alpha diversity values by sample.
metadata : Metadata
The sample metadata.
Returns
-------
visualization : Visualization
