Docstring:
Usage: qiime demux tabulate-read-counts [OPTIONS]
Generate a per-sample count of sequence reads.
Inputs:
--i-sequences ARTIFACTS... List[SampleData[SequencesWithQuality |
PairedEndSequencesWithQuality | JoinedSequencesWithQuality]]
One or more collections of demultiplexed sequences.
[required]
Outputs:
--o-counts ARTIFACT
ImmutableMetadata [required]
Miscellaneous:
--output-dir PATH Output unspecified results to a directory
--verbose / --quiet Display verbose output to stdout and/or stderr
during execution of this action. Or silence output if
execution is successful (silence is golden).
--example-data PATH Write example data and exit.
--citations Show citations and exit.
--use-cache DIRECTORY Specify the cache to be used for the intermediate
work of this action. If not provided, the default
cache under $TMP/qiime2/ will be used.
IMPORTANT FOR HPC USERS: If you are on an HPC system
and are using parallel execution it is important to
set this to a location that is globally accessible to
all nodes in the cluster.
--help Show this message and exit.
Import:
from qiime2.plugins.demux.methods import tabulate_read_counts
Docstring:
Tabulate counts per sample
Generate a per-sample count of sequence reads.
Parameters
----------
sequences : List[SampleData[SequencesWithQuality | PairedEndSequencesWithQuality | JoinedSequencesWithQuality]]
One or more collections of demultiplexed sequences.
Returns
-------
counts : ImmutableMetadata