summarize: Summarize counts per sample.¶

Docstring:

Usage: qiime demux summarize [OPTIONS]

  Summarize counts per sample for all samples, and generate interactive
  positional quality plots based on `n` randomly selected sequences.

Inputs:
  --i-data ARTIFACT SampleData[SequencesWithQuality |
    PairedEndSequencesWithQuality | JoinedSequencesWithQuality]
                         The demultiplexed sequences to be summarized.
                                                                    [required]
Parameters:
  --p-n INTEGER          The number of sequences that should be selected at
                         random for quality score plots. The quality plots
                         will present the average positional qualities across
                         all of the sequences selected. If input sequences are
                         paired end, plots will be generated for both forward
                         and reverse reads for the same `n` sequences.
                                                              [default: 10000]
Outputs:
  --o-visualization VISUALIZATION
                                                                    [required]
Miscellaneous:
  --output-dir PATH      Output unspecified results to a directory
  --verbose / --quiet    Display verbose output to stdout and/or stderr
                         during execution of this action. Or silence output if
                         execution is successful (silence is golden).
  --example-data PATH    Write example data and exit.
  --citations            Show citations and exit.
  --use-cache DIRECTORY  Specify the cache to be used for the intermediate
                         work of this action. If not provided, the default
                         cache under $TMP/qiime2/ will be used.
                         IMPORTANT FOR HPC USERS: If you are on an HPC system
                         and are using parallel execution it is important to
                         set this to a location that is globally accessible to
                         all nodes in the cluster.
  --help                 Show this message and exit.

Examples:
  # ### example: demux
  qiime demux summarize \
    --i-data demux.qza \
    --o-visualization visualization.qzv