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visualize-stats: Visualize Deblur stats per sample.¶
Docstring:
Usage: qiime deblur visualize-stats [OPTIONS]
Display Deblur statistics per sample
Inputs:
--i-deblur-stats ARTIFACT
DeblurStats Summary statistics of the Deblur process. [required]
Outputs:
--o-visualization VISUALIZATION
[required]
Miscellaneous:
--output-dir PATH Output unspecified results to a directory
--verbose / --quiet Display verbose output to stdout and/or stderr
during execution of this action. Or silence output if
execution is successful (silence is golden).
--example-data PATH Write example data and exit.
--citations Show citations and exit.
--use-cache DIRECTORY Specify the cache to be used for the intermediate
work of this action. If not provided, the default
cache under $TMP/qiime2/ will be used.
IMPORTANT FOR HPC USERS: If you are on an HPC system
and are using parallel execution it is important to
set this to a location that is globally accessible to
all nodes in the cluster.
--help Show this message and exit.
Examples:
# ### example: visualize stats
qiime deblur visualize-stats \
--i-deblur-stats deblur-stats.qza \
--o-visualization deblur-stats-viz.qzv
Import:
from qiime2.plugins.deblur.visualizers import visualize_stats
Docstring:
Visualize Deblur stats per sample.
Display Deblur statistics per sample
Parameters
----------
deblur_stats : DeblurStats
Summary statistics of the Deblur process.
Returns
-------
visualization : Visualization