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visualize-stats: Visualize Deblur stats per sample.ΒΆ

Docstring:

Usage: qiime deblur visualize-stats [OPTIONS]

  Display Deblur statistics per sample

Inputs:
  --i-deblur-stats ARTIFACT
    DeblurStats          Summary statistics of the Deblur process.  [required]
Outputs:
  --o-visualization VISUALIZATION
                                                                    [required]
Miscellaneous:
  --output-dir PATH      Output unspecified results to a directory
  --verbose / --quiet    Display verbose output to stdout and/or stderr
                         during execution of this action. Or silence output if
                         execution is successful (silence is golden).
  --example-data PATH    Write example data and exit.
  --citations            Show citations and exit.
  --use-cache DIRECTORY  Specify the cache to be used for the intermediate
                         work of this action. If not provided, the default
                         cache under $TMP/qiime2/ will be used.
                         IMPORTANT FOR HPC USERS: If you are on an HPC system
                         and are using parallel execution it is important to
                         set this to a location that is globally accessible to
                         all nodes in the cluster.
  --help                 Show this message and exit.

Examples:
  # ### example: visualize stats
  qiime deblur visualize-stats \
    --i-deblur-stats deblur-stats.qza \
    --o-visualization deblur-stats-viz.qzv

Import:

from qiime2.plugins.deblur.visualizers import visualize_stats

Docstring:

Visualize Deblur stats per sample.

Display Deblur statistics per sample

Parameters
----------
deblur_stats : DeblurStats
    Summary statistics of the Deblur process.

Returns
-------
visualization : Visualization