Docstring:
Usage: qiime composition tabulate [OPTIONS]
Generate tabular view of ANCOM-BC output, which includes per-page views for
the log-fold change (lfc), standard error (se), P values, Q values, and W
scores.
Inputs:
--i-data ARTIFACT FeatureData[DifferentialAbundance]
The ANCOM-BC output to be tabulated. [required]
Outputs:
--o-visualization VISUALIZATION
[required]
Miscellaneous:
--output-dir PATH Output unspecified results to a directory
--verbose / --quiet Display verbose output to stdout and/or stderr
during execution of this action. Or silence output if
execution is successful (silence is golden).
--example-data PATH Write example data and exit.
--citations Show citations and exit.
--use-cache DIRECTORY Specify the cache to be used for the intermediate
work of this action. If not provided, the default
cache under $TMP/qiime2/ will be used.
IMPORTANT FOR HPC USERS: If you are on an HPC system
and are using parallel execution it is important to
set this to a location that is globally accessible to
all nodes in the cluster.
--help Show this message and exit.
Import:
from qiime2.plugins.composition.visualizers import tabulate
Docstring:
View tabular output from ANCOM-BC.
Generate tabular view of ANCOM-BC output, which includes per-page views for
the log-fold change (lfc), standard error (se), P values, Q values, and W
scores.
Parameters
----------
data : FeatureData[DifferentialAbundance]
The ANCOM-BC output to be tabulated.
Returns
-------
visualization : Visualization