Docstring:
Usage: qiime composition add-pseudocount [OPTIONS]
Increment all counts in table by pseudocount.
Inputs:
--i-table ARTIFACT FeatureTable[Frequency]
The feature table to which pseudocounts should be
added. [required]
Parameters:
--p-pseudocount INTEGER
The value to add to all counts in the feature table.
[default: 1]
Outputs:
--o-composition-table ARTIFACT FeatureTable[Composition]
The resulting feature table. [required]
Miscellaneous:
--output-dir PATH Output unspecified results to a directory
--verbose / --quiet Display verbose output to stdout and/or stderr
during execution of this action. Or silence output if
execution is successful (silence is golden).
--example-data PATH Write example data and exit.
--citations Show citations and exit.
--use-cache DIRECTORY Specify the cache to be used for the intermediate
work of this action. If not provided, the default
cache under $TMP/qiime2/ will be used.
IMPORTANT FOR HPC USERS: If you are on an HPC system
and are using parallel execution it is important to
set this to a location that is globally accessible to
all nodes in the cluster.
--help Show this message and exit.
Import:
from qiime2.plugins.composition.methods import add_pseudocount
Docstring:
Add pseudocount to table.
Increment all counts in table by pseudocount.
Parameters
----------
table : FeatureTable[Frequency]
The feature table to which pseudocounts should be added.
pseudocount : Int, optional
The value to add to all counts in the feature table.
Returns
-------
composition_table : FeatureTable[Composition]
The resulting feature table.
