Installing QIIME 2 using Docker¶

The following QIIME 2 distributions are available as Docker images:

amplicon
metagenome
pathogenome
tiny

Please replace <distribution> with your desired distribution in the installation instructions below.

1. Set up Docker¶

See https://www.docker.com for details.

2. Download desired QIIME 2 Distribution Image¶

In a terminal with Docker activated, run:

docker pull quay.io/qiime2/<distribution>:2024.10

3. Confirm the installation¶

Run the following to confirm that the image was successfully fetched.

docker run -t -i -v $(pwd):/data quay.io/qiime2/<distribution>:2024.10 qiime