gneiss¶
| Description |
This is a QIIME 2 plugin supporting statistical models on feature tables and metadata using balances. |
|---|---|
| Version | 2023.7.0 |
| Website | https://biocore.github.io/gneiss/ |
| Support |
Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org |
| q2cli Invocation | qiime gneiss
|
| Artifact API Import | from qiime2.plugins import gneiss
|
| Citations |
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Methods¶
- assign-ids: Assigns ids on internal nodes in the tree, and makes sure that they are consistent with the table columns.
- correlation-clustering: Hierarchical clustering using feature correlation.
- gradient-clustering: Hierarchical clustering using gradient information.
- ilr-hierarchical: Isometric Log-ratio Transform applied to a hierarchical clustering
- ilr-phylogenetic: Isometric Log-ratio Transform applied to a phylogenetic tree
- ilr-phylogenetic-differential: Differentially abundant Phylogenetic Log Ratios.
- ilr-phylogenetic-ordination: Ordination through a phylogenetic Isometric Log Ratio transform.