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Description This QIIME 2 plugin supports methods for analysis of time series data, involving either paired sample comparisons or longitudinal study designs.
Version 2021.4.0
Support Please post to the QIIME 2 forum for help with this plugin:
q2cli Invocation
qiime longitudinal
Artifact API Import
from qiime2.plugins import longitudinal


  • Nicholas A. Bokulich, Matthew R. Dillon, Yilong Zhang, Jai Ram Rideout, Evan Bolyen, Huilin Li, Paul S. Albert, and J. Gregory Caporaso. Q2-longitudinal: longitudinal and paired-sample analyses of microbiome data. mSystems, 3(6):e00219–18, 2018. doi:10.1128/mSystems.00219-18.