Fork me on GitHub

Installing QIIME 2 using WSLΒΆ

Please see the official Microsoft guide to install and set up the WSL. Once you have installed and set up the WSL, install a Linux distribution (step 6 of the WSL guide). We suggest the latest stable version of Ubuntu.

Once you have set up the WSL, you can follow the native conda installation guide, choosing the Windows Subsystem for Linux (64-bit) instructions to finish setting up QIIME 2.

Please check out the QIIME 2 Forum for Community Contributions related to setting up and using the WSL.