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longitudinal

Description This QIIME 2 plugin supports methods for analysis of time series data, involving either paired sample comparisons or longitudinal study designs.
Version 2019.7.0
Website https://github.com/qiime2/q2-longitudinal
Support Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
q2cli Invocation
qiime longitudinal
Artifact API Import
from qiime2.plugins import longitudinal

Citations
  • Nicholas A. Bokulich, Matthew R. Dillon, Yilong Zhang, Jai Ram Rideout, Evan Bolyen, Huilin Li, Paul S. Albert, and J. Gregory Caporaso. Q2-longitudinal: longitudinal and paired-sample analyses of microbiome data. mSystems, 3(6):e00219–18, 2018. doi:10.1128/mSystems.00219-18.