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barplot: Visualize taxonomy with an interactive bar plotΒΆ

Docstring:

Usage: qiime taxa barplot [OPTIONS]

  This visualizer produces an interactive barplot visualization of
  taxonomies. Interactive features include multi-level sorting, plot
  recoloring, sample relabeling, and SVG figure export.

Inputs:
  --i-table ARTIFACT FeatureTable[Frequency]
                         Feature table to visualize at various taxonomic
                         levels.                                    [required]
  --i-taxonomy ARTIFACT FeatureData[Taxonomy]
                         Taxonomic annotations for features in the provided
                         feature table. All features in the feature table must
                         have a corresponding taxonomic annotation. Taxonomic
                         annotations that are not present in the feature table
                         will be ignored.                           [required]
Parameters:
  --m-metadata-file METADATA...
    (multiple            The sample metadata.
     arguments will be
     merged)                                                        [required]
Outputs:
  --o-visualization VISUALIZATION
                                                                    [required]
Miscellaneous:
  --output-dir PATH      Output unspecified results to a directory
  --verbose / --quiet    Display verbose output to stdout and/or stderr
                         during execution of this action. Or silence output if
                         execution is successful (silence is golden).
  --citations            Show citations and exit.
  --help                 Show this message and exit.

Import:

from qiime2.plugins.taxa.visualizers import barplot

Docstring:

Visualize taxonomy with an interactive bar plot

This visualizer produces an interactive barplot visualization of
taxonomies. Interactive features include multi-level sorting, plot
recoloring, sample relabeling, and SVG figure export.

Parameters
----------
table : FeatureTable[Frequency]
    Feature table to visualize at various taxonomic levels.
taxonomy : FeatureData[Taxonomy]
    Taxonomic annotations for features in the provided feature table. All
    features in the feature table must have a corresponding taxonomic
    annotation. Taxonomic annotations that are not present in the feature
    table will be ignored.
metadata : Metadata
    The sample metadata.

Returns
-------
visualization : Visualization