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midpoint-root: Midpoint root an unrooted phylogenetic tree.ΒΆ

Docstring:

Usage: qiime phylogeny midpoint-root [OPTIONS]

  Midpoint root an unrooted phylogenetic tree.

Inputs:
  --i-tree ARTIFACT Phylogeny[Unrooted]
                       The phylogenetic tree to be rooted.          [required]
Outputs:
  --o-rooted-tree ARTIFACT
    Phylogeny[Rooted]  The rooted phylogenetic tree.                [required]
Miscellaneous:
  --output-dir PATH    Output unspecified results to a directory
  --verbose / --quiet  Display verbose output to stdout and/or stderr during
                       execution of this action. Or silence output if
                       execution is successful (silence is golden).
  --citations          Show citations and exit.
  --help               Show this message and exit.

Import:

from qiime2.plugins.phylogeny.methods import midpoint_root

Docstring:

Midpoint root an unrooted phylogenetic tree.

Midpoint root an unrooted phylogenetic tree.

Parameters
----------
tree : Phylogeny[Unrooted]
    The phylogenetic tree to be rooted.

Returns
-------
rooted_tree : Phylogeny[Rooted]
    The rooted phylogenetic tree.