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presence-absence: Convert to presence/absenceΒΆ

Docstring:

Usage: qiime feature-table presence-absence [OPTIONS]

  Convert frequencies to binary values indicating presence or absence of a
  feature in a sample.

Inputs:
  --i-table ARTIFACT FeatureTable[Frequency | RelativeFrequency]
                       The feature table to be converted into
                       presence/absence abundances.                 [required]
Outputs:
  --o-presence-absence-table ARTIFACT FeatureTable[PresenceAbsence]
                       The resulting presence/absence feature table.
                                                                    [required]
Miscellaneous:
  --output-dir PATH    Output unspecified results to a directory
  --verbose / --quiet  Display verbose output to stdout and/or stderr during
                       execution of this action. Or silence output if
                       execution is successful (silence is golden).
  --citations          Show citations and exit.
  --help               Show this message and exit.

Import:

from qiime2.plugins.feature_table.methods import presence_absence

Docstring:

Convert to presence/absence

Convert frequencies to binary values indicating presence or absence of a
feature in a sample.

Parameters
----------
table : FeatureTable[Frequency | RelativeFrequency]
    The feature table to be converted into presence/absence abundances.

Returns
-------
presence_absence_table : FeatureTable[PresenceAbsence]
    The resulting presence/absence feature table.