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merge: Combine multiple tablesΒΆ

Docstring:

Usage: qiime feature-table merge [OPTIONS]

  Combines feature tables using the `overlap_method` provided.

Inputs:
  --i-tables ARTIFACTS... List[FeatureTable[Frequency]]
                       The collection of feature tables to be merged.
                                                                    [required]
Parameters:
  --p-overlap-method TEXT Choices('error_on_overlapping_sample',
    'error_on_overlapping_feature', 'sum')
                       Method for handling overlapping ids.
                                      [default: 'error_on_overlapping_sample']
Outputs:
  --o-merged-table ARTIFACT FeatureTable[Frequency]
                       The resulting merged feature table.          [required]
Miscellaneous:
  --output-dir PATH    Output unspecified results to a directory
  --verbose / --quiet  Display verbose output to stdout and/or stderr during
                       execution of this action. Or silence output if
                       execution is successful (silence is golden).
  --citations          Show citations and exit.
  --help               Show this message and exit.

Import:

from qiime2.plugins.feature_table.methods import merge

Docstring:

Combine multiple tables

Combines feature tables using the `overlap_method` provided.

Parameters
----------
tables : List[FeatureTable[Frequency]]
    The collection of feature tables to be merged.
overlap_method : Str % Choices('error_on_overlapping_sample', 'error_on_overlapping_feature', 'sum'), optional
    Method for handling overlapping ids.

Returns
-------
merged_table : FeatureTable[Frequency]
    The resulting merged feature table.