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merge-taxa: Combine collections of feature taxonomiesΒΆ

Docstring:

Usage: qiime feature-table merge-taxa [OPTIONS]

  Combines a pair of feature data objects which may or may not contain data
  for the same features. If different feature data is present for the same
  feature id in the inputs, the data from the first will be propagated to
  the result.

Inputs:
  --i-data ARTIFACTS... List[FeatureData[Taxonomy]]
                         The collection of feature taxonomies to be merged.
                                                                    [required]
Outputs:
  --o-merged-data ARTIFACT FeatureData[Taxonomy]
                         The resulting collection of feature taxonomies
                         containing all feature taxonomies provided.
                                                                    [required]
Miscellaneous:
  --output-dir PATH      Output unspecified results to a directory
  --verbose / --quiet    Display verbose output to stdout and/or stderr
                         during execution of this action. Or silence output if
                         execution is successful (silence is golden).
  --citations            Show citations and exit.
  --help                 Show this message and exit.

Import:

from qiime2.plugins.feature_table.methods import merge_taxa

Docstring:

Combine collections of feature taxonomies

Combines a pair of feature data objects which may or may not contain data
for the same features. If different feature data is present for the same
feature id in the inputs, the data from the first will be propagated to the
result.

Parameters
----------
data : List[FeatureData[Taxonomy]]
    The collection of feature taxonomies to be merged.

Returns
-------
merged_data : FeatureData[Taxonomy]
    The resulting collection of feature taxonomies containing all feature
    taxonomies provided.