Docstring:
Usage: qiime phylogeny filter-table [OPTIONS]
Remove features from a feature table if their identifiers are not tip
identifiers in tree.
Options:
--i-table ARTIFACT PATH FeatureTable[Frequency]
Feature table that features should be
filtered from. [required]
--i-tree ARTIFACT PATH Phylogeny[Rooted | Unrooted]
Tree where tip identifiers are the feature
identifiers that should be retained in the
table. [required]
--o-filtered-table ARTIFACT PATH FeatureTable[Frequency]
The resulting feature table. [required if
not passing --output-dir]
--output-dir DIRECTORY Output unspecified results to a directory
--cmd-config FILE Use config file for command options
--verbose Display verbose output to stdout and/or
stderr during execution of this action.
[default: False]
--quiet Silence output if execution is successful
(silence is golden). [default: False]
--citations Show citations and exit.
--help Show this message and exit.
Import:
from qiime2.plugins.phylogeny.methods import filter_table
Docstring:
Remove features from table if they're not present in tree.
Remove features from a feature table if their identifiers are not tip
identifiers in tree.
Parameters
----------
table : FeatureTable[Frequency]
Feature table that features should be filtered from.
tree : Phylogeny[Rooted | Unrooted]
Tree where tip identifiers are the feature identifiers that should be
retained in the table.
Returns
-------
filtered_table : FeatureTable[Frequency]
The resulting feature table.