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vsearch

Description This plugin wraps the vsearch application, and provides methods for clustering and dereplicating features and sequences.
Version 2018.11.0
Website https://github.com/qiime2/q2-vsearch
Support Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
q2cli Invocation
qiime vsearch
Artifact API Import
from qiime2.plugins import vsearch

Citations

[vsearch:RFN+16]Torbjørn Rognes, Tomáš Flouri, Ben Nichols, Christopher Quince, and Frédéric Mahé. Vsearch: a versatile open source tool for metagenomics. PeerJ, 4:e2584, 2016. doi:10.7717/peerj.2584.