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tabulate-seqs: View sequence associated with each feature

Citations

[feature-table:tabulate-seqs:Coo17]NCBI Resource Coordinators. Database resources of the national center for biotechnology information. Nucleic Acids Research, 45(D1):D12–D17, 2017. doi:10.1093/nar/gkw1071.
[feature-table:tabulate-seqs:JZR+08]Mark Johnson, Irena Zaretskaya, Yan Raytselis, Yuri Merezhuk, Scott McGinnis, and Thomas L. Madden. Ncbi blast: a better web interface. Nucleic Acids Research, 36(suppl_2):W5–W9, 2008. doi:10.1093/nar/gkn201.

Docstring:

Usage: qiime feature-table tabulate-seqs [OPTIONS]

  Generate tabular view of feature identifier to sequence mapping, including
  links to BLAST each sequence against the NCBI nt database.

Options:
  --i-data ARTIFACT PATH FeatureData[Sequence]
                                  The feature sequences to be tabulated.
                                  [required]
  --o-visualization VISUALIZATION PATH
                                  [required if not passing --output-dir]
  --output-dir DIRECTORY          Output unspecified results to a directory
  --cmd-config FILE               Use config file for command options
  --verbose                       Display verbose output to stdout and/or
                                  stderr during execution of this action.
                                  [default: False]
  --quiet                         Silence output if execution is successful
                                  (silence is golden).  [default: False]
  --citations                     Show citations and exit.
  --help                          Show this message and exit.

Import:

from qiime2.plugins.feature_table.visualizers import tabulate_seqs

Docstring:

View sequence associated with each feature

Generate tabular view of feature identifier to sequence mapping, including
links to BLAST each sequence against the NCBI nt database.

Parameters
----------
data : FeatureData[Sequence]
    The feature sequences to be tabulated.

Returns
-------
visualization : Visualization