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presence-absence: Convert to presence/absenceΒΆ

Docstring:

Usage: qiime feature-table presence-absence [OPTIONS]

  Convert frequencies to binary values indicating presence or absence of a
  feature in a sample.

Options:
  --i-table ARTIFACT PATH FeatureTable[Frequency | RelativeFrequency]
                                  The feature table to be converted into
                                  presence/absence abundances.  [required]
  --o-presence-absence-table ARTIFACT PATH FeatureTable[PresenceAbsence]
                                  The resulting presence/absence feature
                                  table.  [required if not passing --output-
                                  dir]
  --output-dir DIRECTORY          Output unspecified results to a directory
  --cmd-config FILE               Use config file for command options
  --verbose                       Display verbose output to stdout and/or
                                  stderr during execution of this action.
                                  [default: False]
  --quiet                         Silence output if execution is successful
                                  (silence is golden).  [default: False]
  --citations                     Show citations and exit.
  --help                          Show this message and exit.

Import:

from qiime2.plugins.feature_table.methods import presence_absence

Docstring:

Convert to presence/absence

Convert frequencies to binary values indicating presence or absence of a
feature in a sample.

Parameters
----------
table : FeatureTable[Frequency | RelativeFrequency]
    The feature table to be converted into presence/absence abundances.

Returns
-------
presence_absence_table : FeatureTable[PresenceAbsence]
    The resulting presence/absence feature table.