Fork me on GitHub

merge-taxa: Combine collections of feature taxonomiesΒΆ

Docstring:

Usage: qiime feature-table merge-taxa [OPTIONS]

  Combines a pair of feature data objects which may or may not contain data
  for the same features. If different feature data is present for the same
  feature id in the inputs, the data from the first will be propagated to
  the result.

Options:
  --i-data MULTIPLE ARTIFACT PATH List[FeatureData[Taxonomy]]
                                  The collection of feature taxonomies to be
                                  merged.  [required]
  --o-merged-data ARTIFACT PATH FeatureData[Taxonomy]
                                  The resulting collection of feature
                                  taxonomies containing all feature taxonomies
                                  provided.  [required if not passing
                                  --output-dir]
  --output-dir DIRECTORY          Output unspecified results to a directory
  --cmd-config FILE               Use config file for command options
  --verbose                       Display verbose output to stdout and/or
                                  stderr during execution of this action.
                                  [default: False]
  --quiet                         Silence output if execution is successful
                                  (silence is golden).  [default: False]
  --citations                     Show citations and exit.
  --help                          Show this message and exit.

Import:

from qiime2.plugins.feature_table.methods import merge_taxa

Docstring:

Combine collections of feature taxonomies

Combines a pair of feature data objects which may or may not contain data
for the same features. If different feature data is present for the same
feature id in the inputs, the data from the first will be propagated to the
result.

Parameters
----------
data : List[FeatureData[Taxonomy]]
    The collection of feature taxonomies to be merged.

Returns
-------
merged_data : FeatureData[Taxonomy]
    The resulting collection of feature taxonomies containing all feature
    taxonomies provided.