QIIME 2 user documentation¶
This site is the official user documentation for QIIME™ 2, including installation instructions, tutorials, and other important information. Visit http://qiime.org for information on QIIME™ 1.
Getting started¶
Check out the getting started guide to begin using QIIME 2.
Table of contents¶
- Getting started
- What is QIIME 2?
- Core concepts
- Installing QIIME 2
- Tutorials
- “Moving Pictures” tutorial
- Fecal microbiota transplant (FMT) study: an exercise
- “Atacama soil microbiome” tutorial
- Differential abundance analysis with gneiss
- Importing data
- Exporting data
- Metadata in QIIME 2
- Filtering data
- Training feature classifiers with q2-feature-classifier
- Evaluating and controlling data quality with q2-quality-control
- Predicting sample metadata values with q2-sample-classifier
- Performing longitudinal and paired sample comparisons with q2-longitudinal
- Interfaces
- Plugins
- Semantic types
- Community
- Data resources
- Supplementary resources
- Glossary